New study [1]. I don't believe this subject has come up before.
There was a recent thread where one view was that PCa is largely due to lifestyle, while I lean more to the estimate that two-thirds of cases are due to chance.
But didn't Einstein say that "God does not play dice with the prostate"?
Well, if you don't like the chance idea, or the thought that we are to blame because of poor lifestyle choices, we now have the microbiome to ponder.
Much has been written about the gut microbiome, & that we have no free will, because the gut microbiome controls the brain [2]. LOL
But the new study is about the microbiome signatures in PCa cells.
Here is a creepy part for those who are yawning:
"A surprising result from our study is the presence of parasite signatures in prostate tumor samples. However, parasites have been directly or indirectly associated with several different cancers (70–77). For example, Anisakis has been suggested to be a risk factor in colon and stomach cancers (76); Toxoplasma has been shown to induce prostatic inflammation and hyperplasia (75); Blastocystis is found predominantly in colorectal cancer (77); Schistosoma in bladder cancer (72); and Strongyloides has been associated with gastric and other cancers (71,74). In addition, the intestinal nematode Anisakis has been reported previously in the male urinary tract (78). We report finding signatures for these parasites in the prostate tumor samples. We also detected Plasmodium in the prostate tumor samples, which is interesting because it has been reported to activate EBV from latency (73). In addition, Plasmodium has been reported to be a potent mutagen that can indirectly induce chromosomal damage (79), produce reactive oxygen species (80) and inhibit apoptosis (81), potentially facilitating oncogenesis."
The link is to the full text - it's a long paper. Here is the Discussion section:
"In previous studies, we defined the microbial signatures associated with different breast cancer types (12,13), oral cancer and ovarian cancer (14,15). These studies showed that the tumor microbiome is quite diverse compared with normal tissue and that different tumor types have distinguishing microbiome signatures. The microbiome in prostate tumors was detected at significantly higher levels than in control tissue; however, the levels of viruses and microorganisms in the prostate tumor microbiome were still relatively low. Thus, it is unlikely that we are detecting a meaningful replicative infection. We suggest that although the presence of the tumor microbiome may affect the course of the cancer, it is likely that the tumor microenvironment provides a specialized niche in which viruses and microorganisms can persist more readily than in normal tissue. In the present study, we examined the microbiome of prostate cancer compared with prostate tissue from BPH patients and reported a diverse and distinct prostate tumor microbiome compared with that of the controls.
"Our study is not the first to suggest the presence of viruses and bacteria in the prostate. Several studies have documented that viral and bacterial infection of the prostate are risk factors associated with prostate cancer development (1,7,9,18,40–43).
"In this regard, our data suggest a prominent representation of tumor viruses in the prostate cancer samples compared with the BPH controls. It is noteworthy that many of the viral families were detected by PathoChip probes that represent conserved regions found in all members of the virus family. Probes for specific family members were the least represented, possibly suggesting significant strain variation among individual family members. Alternatively, the higher detection by conserved probes may suggest heretofore uncharacterized members of the virus family. Our data neither support nor deny that these viruses have any direct consequence in prostate oncogenesis (44). Previous studies (7,9,18,40,42,45–47) support our findings of viral signatures in prostate cancers, these include the detection of HPV [including HPV18 (11)], HCMV, EBV, JCV and BKV. Also, our detection of the oncogenic papillomavirus HPV18 in prostate cancer has been reported (11). However, reports of the association of viruses with prostate cancer have been controversial, for example, the association of the endogenous retrovirus, xenotropic murine leukemia-related virus in familial prostate cancer patients (43,48). In this regard, we did not detect xenotropic murine leukemia-related virus, but did detect signatures of other endogenous retroviruses, such as the alpharetrovirus RSV, betaretrovirus MMTV and gammaretrovirus MMLV. In agreement, a previous study reported that MMTV-like virus DNA was found in 36% of prostate cancers tested (45). Overall, past studies support our finding of a diverse virome in prostate cancer.
"Considering the bacterial microbiome, several previous studies have reported an abundance of Proteobacteria associated with dysbiosis-related diseases including cancer (49–51). A recent study using ultra-deep pyrosequencing showed the dominance of Actinobacteria in cancerous, pre-cancerous and non-cancerous prostate tissues, Propionibacterium being the most abundant, followed by Corynebacterium (17). Most of the bacterial genera detected in that study were also detected in the present study. An association of Chlamydia trachomatis and P.acnes has correlated with increased risk for prostate cancer development due to their pro-inflammatory host responses (52,53). We detected signatures of both, with medium and low hybridization signal in at least 85% of the prostate cancer cases studied. Another study has suggested that chronic mycoplasma infection may contribute to prostate cancer development in BPH cells (34). In this regard, we detected mycoplasma signatures with high hybridization signal intensity in at least 90% of the prostate cancer samples examined. Thus, there is good agreement between previous studies and our study as to the presence of bacterial signatures in prostate cancer.
"We also detected signatures of Helicobacter in >90% of prostate cancer cases. In this regard, previous studies have suggested that H.pylori infection may contribute to prostate diseases (38,39). One of these studies demonstrated H.pylori DNA in the prostatic tissue of both BPH and a prostate cancer patient (39). Our study detected signals from few Helicobacter probes in the BPH controls, none of which were significantly higher than in the cancers (Supplementary Table S3, available at Carcinogenesis Online). Thus, Helicobacter is likely to be a low-level component of the BPH microbiome as suggested by the PCR validation (Figure 4). In the present study, we found sequences of H.pylori to be integrated at certain locations in the human somatic chromosomes 17, 7 and 11 (17q21.31, 7q21.3, 11q23.2). The integration of the cagA gene sequence in PPP1R9A and NCAM1 gene locations may result in deregulation of their gene expression. Although PPP1R9A gene overexpression seen in prostate cancer (54) provides growth advantage to malignant cells, downregulation of NCAM1 gene has been identified in several human cancers suggesting that it might function as a tumor repressor (55). It was thus interesting to find H.pylori cagA gene integrations in PPP1R9A and NCAM1 genes, which may be a contributing factor to prostate tumorigenesis. Notably, one previous report has suggested Helicobacter DNA integration in a stomach adenocarcinoma (56). Although few studies have been done to examine the integration of bacterial sequences in human cell DNA, such integrations have been reported more frequently in tumors than in controls (56). Our study suggests that there is a marked increase in integration of viral and microbial sequences in prostate tumor DNA; we have reported similar findings for other tumors (14,15).
"The integrated H.pylori DNA that we detected in prostate tumor cells include the sequences of the cagA gene, which encodes the immune-dominant cagA virulence factor (57). CagA is also associated with more severe gastric cancer (57–61). Gastric cancer patients are at least twice as likely to be infected with an H.pylori strain that is cagA positive than one that is cagA negative (59,61). This is significant because cagA is known to activate proto-oncogenes and inactivate tumor suppressor genes (33,62); thus, cagA plays an important role in disease progression in cases of gastric cancer (57,63). Thus, the finding of cagA sequences integrated in prostate cancer cell DNA poses the intriguing possibility that it may function in the establishment or progression of the cancer.
"Among fungi, dermatophytes comprised the largest number of the fungal signatures detected in the prostate cancer samples. This may be because they are commonly detected in cancer patients (64). Similarly, the abundant detection of yeasts in the cancer cases is consistent with studies showing that opportunistic yeast infections are common in cancer cases (65–67). Also, consistent with the present study are previous reports of high incidence of microsporidia, such as Encephalitozoon and Fonsecaea, in cancer (68,69). In particular, chronic chromoblastomycosis, caused by Fonsecaea, has been suggested to promote squamous cell carcinoma (69). As was the case with viral and bacterial signatures, there is substantial agreement between previous studies and our study as to the presence of fungal signatures in prostate cancer.
"A surprising result from our study is the presence of parasite signatures in prostate tumor samples. However, parasites have been directly or indirectly associated with several different cancers (70–77). For example, Anisakis has been suggested to be a risk factor in colon and stomach cancers (76); Toxoplasma has been shown to induce prostatic inflammation and hyperplasia (75); Blastocystis is found predominantly in colorectal cancer (77); Schistosoma in bladder cancer (72); and Strongyloides has been associated with gastric and other cancers (71,74). In addition, the intestinal nematode Anisakis has been reported previously in the male urinary tract (78). We report finding signatures for these parasites in the prostate tumor samples. We also detected Plasmodium in the prostate tumor samples, which is interesting because it has been reported to activate EBV from latency (73). In addition, Plasmodium has been reported to be a potent mutagen that can indirectly induce chromosomal damage (79), produce reactive oxygen species (80) and inhibit apoptosis (81), potentially facilitating oncogenesis.
"Hierarchical cluster analysis showed that the microbiome signatures of the prostate tumors could be grouped into distinct clusters (1, 2a and 2b), suggesting that within prostate tumors different microbiomes are present. Thus, the microbiome may correlate with diagnostic aspects of the disease. Using the limited clinical data that were available for de-identified samples (Gleason grades, Gleason scores and the reported stages of the cancer), we looked for correlative trends between the clinical data and the specific clusters. The sample size is small, and our findings are largely correlative; however, we did find correlations that suggest that specific microbiome signatures may have prognostic and/or diagnostic value. In this regard, we examined the correlations between specific viral and microbial signatures and Gleason score and stages of cancer. We found that certain signatures were significantly higher in prostate cancer with lower Gleason scores (Supplementary Table S5, available at Carcinogenesis Online), where other signatures were higher in prostate cancer with higher Gleason score (see Results; Figure 3C; Supplementary Table S5, available at Carcinogenesis Online). These finding suggest that hybridization intensity of a group of specific viruses and microorganisms can provide significant prognostic and diagnostic value. It is likely that a study of a larger number of samples will clarify and expand the number of distinct clusters and more closely align clinical data to specific clusters and specific signatures.
"As in our previous PathoChip studies of tumor microbiota (14,15), we validated the specific Papillomaviridae and Herpesviridae signatures by sequencing the prostate tumor samples captured by hybridization to selected positive probes of PathoChip screen. Since the tumors are heterogeneous, we pooled samples for the probe-capture sequencing as we only wanted to validate the presence of those signatures in prostate cancer samples. The results validated the PathoChip results. Probably, the most intriguing result from the verification studies was the finding that some captured viral and microbial sequences contained flanking sequences that aligned to human sequences, thus suggesting sites of viral and microbial DNA integration in human chromosomes. We found many examples of viral and microbial integration in the tumor DNA suggesting that tumor cells exhibit greatly increased recombinatorial activity during the development and expansion of the tumor. We show specific hotspots for integration, which may perturb gene expression or miRNA/lncRNA function in ways that potentially modulate or potentiate oncogenesis.
"The controls for the study were derived from patients with BPH since normal prostate samples are very rare. BPH is an inflammatory pathologic condition of the prostate which in some cases could be caused by microbial infections, and may be a precursor to prostate cancer development (3,82). Thus, it is quite possible that the microbiome between BPH and cancerous tissue may be shared and that viral and bacterial integrations may occur during a pre-cancerous BPH condition. Using the same primers used to validate several microbial insertions in the prostate cancer (Figure 5, Supplementary Figure S7, available at Carcinogenesis Online), we also analyzed integration in BPH. These analyses showed similar amplicon from the prostate controls (Supplementary Figure S9, available at Carcinogenesis Online), which, when sequenced, confirmed these integrations in BPH and the cancer. Overall, the BPH and prostate tumor microbiomes may overlap; however, our data show that there is clearly more diverse microbiome in tumor.
"Observing similar HPV18 and KSHV insertions in the BPH samples as in the cancers were not surprising, as inflammatory prostate of BPH patients were not devoid of those viral detections, although significantly lower than in the cancers (Supplementary Table S3, available at Carcinogenesis Online). However, we did perform quantitative RT-PCR on the affected genes to see whether the gene expression were different in the cancers compared with the controls (Supplementary Figure S10, available at Carcinogenesis Online). The host genes, in which microbial insertions were detected, are already known to be associated with oncogenesis (83–86), and the differential expression of those genes that we detected in the prostate cancer samples and in the controls (Supplementary Figure S10, available at Carcinogenesis Online) were also previously reported (83–86). This may or may not be directly related to microbial genomic insertions within those genes.
"In conclusion, we have identified diverse microbiome signatures associated with prostate cancer samples. Many of the viruses and microorganisms we detected have previously been associated with prostate cancer or other cancers. Our observation of integrations of viruses and bacteria into both BPH and prostate cancer cells is the first demonstration of the diversity of viruses and microorganism that can integrate. The prevalence of integrations, especially in the cancer cells, suggests that these cells may have heightened recombinatorial activity. In several cases, the integrations of viral (HPV18, KSHV) and bacterial (Helicobacter) sequences potentially result in gene expression perturbations, which could influence the initiation or progression of the cancer. Finally, the hierarchical clustering analysis of the prostate tumor microbiome suggests that microbiome signatures may correlate with clinical data, suggesting that the signatures may provide biomarkers for diagnostic and prognostic purposes."
-Patrick